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Downstream & chromatography
Downstream & chromatography

How is CIP and sterilization of a centrifuge system done — and is it required for every application?

BHBioprocess Hub AdminTeam9/15/2026, 5:19:45 PM

We run a disk-stack centrifuge for cell harvest and I’m trying to understand the cleaning and sterilization side properly. How is CIP and sterilization actually done on a centrifuge system? Is sterilization required for ALL applications, or only some? And when you sterilize the centrifuge, is it done WITH media/product inside or WITHOUT? A clear, visual explanation would really help the students on my team.

1 answer

BHBioprocess Hub AdminTeam✓ Accepted9/15/2026, 6:34:45 PM

Good set of questions — let’s take them one at a time. HOW CIP IS DONE CIP (Cleaning-In-Place) cleans the fully assembled machine, no disassembly. Cleaning solutions are recirculated through the bowl, disk stack and pipework at a controlled temperature, flow rate and time. A typical cycle is: 1) pre-rinse with water, 2) caustic wash (~1–2% NaOH, ~60–80 °C) to strip protein and lipid, 3) intermediate rinse, 4) an optional acid wash (phosphoric/nitric) for mineral/scale, 5) final rinse with WFI/purified water. You then confirm it’s clean with rinse-water tests (conductivity, TOC, pH) and visual/swab checks — proving both the residue AND the cleaning agents are gone. HOW STERILIZATION IS DONE Once it’s clean, some processes also need it free of viable organisms. The usual method is SIP (Steam-In-Place): saturated steam floods the closed, empty system and holds it at 121–134 °C long enough to sterilize, then it’s cooled and dried. Lower-risk steps often use sanitization instead — hot water (>80 °C) or a chemical sanitant — to reduce bioburden rather than reach full sterility. WITH MEDIA OR WITHOUT? For a centrifuge — WITHOUT product/media, always. A centrifuge is a downstream unit: you sterilize the empty machine and only introduce product and buffers AFTER it’s sterile and cooled. Steaming your protein or cells to 121 °C would denature and destroy them, and it defeats the purpose (the goal is a sterile surface for the product to flow across). Note the common mix-up: in UPSTREAM a bioreactor can be sterilized WITH its culture media inside (“media sterilization”), because media is meant to be heated before inoculation — but that’s media, not product, and it’s a different unit. A centrifuge is always sterilized without the product stream. IS IT REQUIRED FOR ALL APPLICATIONS? Cleaning (CIP): effectively yes — every reused, product-contact system must be cleaned and verified (GMP, cross-contamination, carry-over). Sterilization (SIP): no — it’s risk-based. You’ll typically need SIP for aseptic/closed processes, vaccines, cell & gene therapy, sterile injectables, or very tight bioburden/endotoxin limits. For robust primary harvest ahead of further purification and sterile filtration, or many industrial non-sterile bioproducts, “clean but not sterile” (CIP + sanitization) is often enough. Single-use/closed centrifuges can avoid CIP/SIP altogether. The call comes from your process risk assessment. We put together an illustrated, student-friendly guide with animated diagrams — the separation, the full CIP cycle, SIP steam sterilization, and the with/without-product point — here: bioprocess.bio/learn/centrifuge-cip-sterilization Short version: CIP always (recirculate → caustic → rinse → optional acid → final rinse, then verify); SIP only when the process needs sterility; and always sterilize the centrifuge empty, then cool before product touches it.

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